|Francis, Christopher||Stanford University||Principal Investigator, Contact|
|York, Amber||Woods Hole Oceanographic Institution (WHOI BCO-DMO)||BCO-DMO Data Manager|
This dataset contains Ammonia-Oxidizing Archaea (AOA) sequence accession information National Center for Biotechnology Information (NCBI). Samples were collected during the R/V Endeavor RMP Sediment Cruise in San Francisco Bay August 2-9, 2006.
For related datasets, click on the project link at the top of the page.
The draft genome sequence of “Ca. Nitrosopumilus salaria” BD31 was obtained as described in Mosier et al. (2012a) and is available in the NCBI GenBank database under accession number AEXL00000000. The raw sequence reads are available in the NCBI SRA database under accession number PRJNA50075.
The draft genome sequence of “Ca. Nitrosoarchaeum limnia” BG20 was obtained as described in Mosier et al. (2012b) and is available in the NCBI GenBank database under accession number AHJG00000000. The raw sequence reads are available in the NCBI SRA database under accession number PRJNA50027.
The draft genome sequence of “Ca. Nitrosoarchaeum limnia” SFB1 was obtained as described in Blainey et al. (2011) and is available in the NCBI GenBank database under accession number AEGP00000000. The version described in the paper is the first version, AEGP01000000.
BCO-DMO Data Manager Processing Notes:
* added a conventional header with dataset name, PI name, version date
* blank values replaced with no data value 'nd'
|Station||Station sample was collected||unitless|
|Latitude||Latitude of sample||decimal degrees|
|Longitude||Longitude of sample; west is negative||decimal degrees|
|Salinity||Saility of sample||Practical Salinity Units (PSU)|
|Depth||Depth of sample||meters|
|Organism||Organism name (enriched and isolated from sediments)||unitless|
|Draft_Genome_Accession||Link to accession at NCBI for the draft genome||unitless|
|SRA_Accession||Link to accession at NCBI for SRA||unitless|
|Start Date|| |
|End Date|| |
2006 Regional Monitoring Program (RMP) Sediment Cruise
This document is created by info v 4.1f 5 Oct 2018 from the content of the BCO-DMO metadata database. 2020-04-09 17:26:51