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#  Cross-phyla clustering of non-redundant carbonate organic matrix proteins
#   Drake et al. 2014 - Supplemental Table S1
#  PI: Paul Falkowski (Rutgers)
#  Co-PIs: Y. Rosenthal, R. Sherrell, & O. Schofield (Rutgers)
#  Version: 27 October 2014
protein_name                                                                      coral_species                               coral_accession                                                       coral_reference     mollusk_species                                                                                                             mollusk_accession                                                                                                                                                                                                                                                     mollusk_reference                                                                                                                                  sea_urchin_species                                    sea_urchin_accession                                                                                                        sea_urchin_reference                                     cellular_component_GO_term  
14-3-3 proteins                                                                   -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi205379; lotgi207549; lotgi222442                                                                                                                                                                                                                                 Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003727876.1                                                                                                              Mann 2010                                                Membrane                    
A Disintigrin/ Metalloproteinase with thrombospondin motfs                        Acropora millepora                          JR989905                                                              Moya                -                                                                                                                           nd                                                                                                                                                                                                                                                                    nd                                                                                                                                                 Strongylocentrotus purpuratus                         XP_780466                                                                                                                   Mann 2010                                                No Usable GO                
Actin                                                                             Stylophora pistillata                       KC342191; KC342193; KC149520                                          Drake               Lottia gigantea                                                                                                             lotgi202971                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         NP_999634                                                                                                                   Mann 2008                                                Cytoskeleton/cytoplasm      
ADP ribosylation factor **                                                        -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi210455; lotgi231498; lotgi236204                                                                                                                                                                                                                                 Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_780019.2; XP_791037.1                                                                                                    Mann 2008; Mann 2010                                     Golgi/ER                    
ATP synthase **                                                                   -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC39329.1; EKC39411.1; lotgi206617; lotgi201878                                                                                                                                                                                                                      Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         NP_999743.1; NP_001116974.1                                                                                                 Mann 2010                                                Mitochondria                
Annexin                                                                           -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi195070; lotgi219490; lotgi219492                                                                                                                                                                                                                                 Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003725708.1; XP_783004.3; XP_798157.2                                                                                    Mann 2008; Mann 2010                                     Membrane                    
Antigen Ki-67 **                                                                  -                                           nd                                                                    nd                  Crassostrea gigas                                                                                                           EKC25595.1                                                                                                                                                                                                                                                            Zhang 2012                                                                                                                                         Strongylocentrotus purpuratus                         XP_999722.1                                                                                                                 Mann 2008                                                Nuclear Region              
Bone morphogenic protein*                                                         -                                           nd                                                                    nd                  Pinctada margaritifera                                                                                                      90c_1652_1                                                                                                                                                                                                                                                            Joubert                                                                                                                                            Strongylocentrotus purpuratus                         NP_999820                                                                                                                   Mann 2010                                                Extracellular               
Cadherin                                                                          Acropora millepora; Stylophora pistillata   JT011093; KC509947; KC00002; KC509948                                 Ramos-Silva; Drake  Lottia gigantea                                                                                                             lotgi106548                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          -                                                     nd                                                                                                                          nd                                                       Membrane                    
Calcium activated chloride channel                                                -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi238844                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_784730.2                                                                                                                 Mann 2008                                                No Usable GO                
Calmodulin                                                                        -                                           nd                                                                    nd                  Pinctada margaritifera; Pinctada fucata; Lottia gigantea; Crassostrea gigas                                                 90c_18304_5; 90c_783_6; AY663847; lotgi148903; lotgi219843; EKC42677.1                                                                                                                                                                                                Joubert; Li; Mann 2012; Zhang 2012                                                                                                                 Strongylocentrotus purpuratus                         XP_003726932                                                                                                                Mann 2008                                                Membrane                    
Chitotriosidase                                                                   Acropora millepora                          JR980703.1                                                            Moya                Crassostrea gigas                                                                                                           EKC38805.1                                                                                                                                                                                                                                                            Zhang 2012                                                                                                                                         -                                                     nd                                                                                                                          nd                                                       Extracellular/membrane      
CUB and peptidase containing                                                      Acropora millepora                          JR970990; JT008002                                                    Ramos-Silva         Crassostrea gigas                                                                                                           EKC18230                                                                                                                                                                                                                                                              Zhang 2012                                                                                                                                         -                                                     nd                                                                                                                          nd                                                       No Usable GO                
Cyclophilin                                                                       -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC37378.1; EKC37379.1; lotgi223760; lotgi222979; lotgi212757                                                                                                                                                                                                         Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_790143.2; NP_001028819.1; SPU008305; SPU007484                                                                           Mann 2008b; Mann 2010; Todgham & Hoffman 2009            Other                       
Cystatin                                                                          -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi229619                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_784732.2                                                                                                                 Mann 2010                                                No Usable GO                
Dentin matrix protein                                                             -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi156599                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_791445.3                                                                                                                 Mann 2008                                                Other                       
Dual oxidase                                                                      -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi99809                                                                                                                                                                                                                                                            Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         NP_001118237                                                                                                                Mann 2008                                                Extracellular/membrane      
Dynein                                                                            -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi203845                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_795406.2; XP_799949.3                                                                                                    Mann 2008                                                Microtubules                
EGF/Notch                                                                         Acropora millepora                          JT010134; JR979981; JT013839; JR973087; JT002642; JR986374; JR986173  Moya                Lottia gigantea                                                                                                             lotgi230171                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_780602; XP_003723785; XP_001179074                                                                                       Mann 2010                                                Extracellular               
Elongation factor **                                                              -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC33063.1; lotgi239271; lotgi199050                                                                                                                                                                                                                                  Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         NP_001116969.1; XP_001175642.1                                                                                              Mann 2008; Mann 2010                                     Cytoplasm                   
Enolase                                                                           -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi182683                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003726238.1                                                                                                              Mann 2008; Mann 2010                                     Other                       
Ferritin                                                                          -                                           nd                                                                    nd                  Lottia gigantea; Pinctada margaritifera                                                                                     lotgi123691; lotgi178880                                                                                                                                                                                                                                              Mann 2012; Joubert                                                                                                                                 Strongylocentrotus purpuratus                         XP_796152.1; XP_003730718.1                                                                                                 Mann 2008                                                No Usable GO                
Fibrogenin                                                                        Acropora millepora                          JT001283.1; JT013475                                                  Moya                Crassostrea gigas                                                                                                           EKC37595.1; EKC37598.1                                                                                                                                                                                                                                                Zhang 2012                                                                                                                                         -                                                     nd                                                                                                                          nd                                                       Extracellular               
Gelsolin                                                                          -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi105757; lotgi144968; lotgi192582; lotgi214936                                                                                                                                                                                                                    Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_792912.2                                                                                                                 Mann 2008                                                Cytoskeleton/cytoplasm      
Glyceraldehyde 3 phosphate dehydrogenase                                          Stylophora pistillata                       KC149521                                                              Drake               Lottia gigantea                                                                                                             lotgi222542                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          -                                                     nd                                                                                                                          nd                                                       Other                       
Heat shock protein                                                                -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi161608                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_781407.2; XP_783030.3; NP_999808.1                                                                                       Mann 2010                                                Membrane                    
Heat shock protein 70                                                             -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC36325.1; lotgi216416; lotgi177837; lotgi190284; lotgi159745                                                                                                                                                                                                        Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_003728714.1; XP_780151.1; XP_003725496.1                                                                                 Zhang 2012                                               Membrane                    
Hephaestin/Ceruplasmin                                                            Acropora millepora                          JT019463                                                              Moya                Lottia gigantea                                                                                                             lotgi83160; lotgi115607                                                                                                                                                                                                                                               Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_791569                                                                                                                   Mann 2010                                                Extracellular/membrane      
Histone **                                                                        -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi175997; lotgi181153                                                                                                                                                                                                                                              Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_00117550; NP_999707.1; NP_001229615.1; P0899.1                                                                           Mann 2008; Mann 2010                                     Nuclear Region              
LDL receptor                                                                      Acropora millepora                          JT010466                                                              Moya                -                                                                                                                           nd                                                                                                                                                                                                                                                                    nd                                                                                                                                                 Strongylocentrotus purpuratus                         XP_003727007; XP_787118; XP_782026                                                                                          Mann 2008b; Mann 2010                                    Membrane                    
Matrix metalloproteinase                                                          Acropora millepora                          JT016142                                                              Moya                Lottia gigantea                                                                                                             lotgi231475                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003729123; XP_003729017; XP_003729016; XP_786545; XP_003725556; XP_791616; XP_791600; NP_001028820; XP_780356            Mann 2008b; Mann 2010; Stumpp                            Extracellular               
MEC2                                                                              -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi214616                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003726858.1                                                                                                              Mann 2008                                                Membrane                    
Metallo endopeptidase/ Endothelin converting enzyme                               Acropora millepora                          JT013571; JT011929                                                    Moya                -                                                                                                                           nd                                                                                                                                                                                                                                                                    nd                                                                                                                                                 Strongylocentrotus purpuratus                         XP_781407                                                                                                                   Mann 2010                                                Other                       
MSP                                                                               -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi190352                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         AF519420.1; NP_9998076.1;NP_999807.1; XP_79810; XP_784596.3; NP_001116986.1;XP_785779.2                                     Illies; Mann 2010; Mann 2008; Todgham & Hofmann; Stumpp  Membrane                    
No consensus homologue name 1                                                     Acropora millepora                          JR989918; JR997520; JT012363                                          Moya                Crassostrea gigas; Lottia gigantea                                                                                          EKC33148.1; lotgi69892                                                                                                                                                                                                                                                Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_785644; XP_786061                                                                                                        Mann 2010                                                Membrane                    
No consensus homologue name 2                                                     -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC30911.1; lotgi116834                                                                                                                                                                                                                                               Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_003724791.1                                                                                                              Mann 2010                                                Extracellular/membrane      
Nucleobindin                                                                      -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi121860                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003723916.1                                                                                                              Mann 2008                                                Membrane                    
Osteonectin                                                                       -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi109908                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         SPU028275                                                                                                                   Todgham & Hofmann                                        Extracellular               
Pancreatic lipase-related                                                         Acropora millepora                          JT011283                                                              Moya                Lottia gigantea                                                                                                             lotgi98299; lotgi98300; lotgi102397; lotgi109426                                                                                                                                                                                                                      Mann 2012                                                                                                                                          -                                                     nd                                                                                                                          nd                                                       Extracellular/membrane      
Peptidyl-glycine alpha-amidating monooxygenase                                    -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi204047                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_784943.3                                                                                                                 Mann 2010                                                Extracellular/membrane      
Peptidyl prolyl isomerase                                                         -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi192237; lotgi238515                                                                                                                                                                                                                                              Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_785999.1                                                                                                                 Mann 2010                                                Membrane                    
Perlwapin/prismalin/molluscan shell prism nacre protein/shematrin/some collagens  Acropora millepora                          JR981811                                                              Moya                Pinctada fucata; Pinctada margaritifera; Haliotis laevigata; Haliotis asinina; Patinopecten yessoensis; Haliotis rufescens  BAE93433; BAE93434; BAE93435; BAE93438; BAE93439; BAD27406; AB159512; ACJ06766; 90c_3996_3; 90c_51_2; 90c_600_4; 90c_334_6; 90c_148_5; 90c_441_3; 90c_1350_1; 90c_942_2; 90c_3172_4; 90c_19664_1; 90c_8234_1; 90c_86_6; P84811; DW986256; Q95YF6; BAB70697; AF023459  Yano; Suzuki; Sudo; Zhang 2003; Evans; Kong; Joubert; Treccani; Marie; Sarashina & Endo 2001; Sarashina & Endo 1998; Hasegawa & Uchiyama; Xuan Ri  Strongylocentrotus purpuratus                         SPU009076; SPU015708; SPU003768; SPU022116; NP_999676                                                                       Mann 2010; Todgham & Hofmann                             Other                       
Peroxidasin                                                                       Acropora millepora                          JT009428                                                              Moya                Lottia gigantea                                                                                                             lotgi99791; lotgi99852                                                                                                                                                                                                                                                Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_797821                                                                                                                   Mann 2010                                                Extracellular               
Ran **                                                                            -                                           nd                                                                    nd                  Crassostrea gigas; Crassostrea gigas                                                                                        EKC36560.1; lotgi104069                                                                                                                                                                                                                                               Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_786730.1                                                                                                                 Mann 2008; Mann 2010                                     Nuclear Region              
Ras-like GTPase/Rab                                                               Acropora millepora                          JT014391                                                              Moya; Ramos-Silva   Lottia gigantea                                                                                                             lotgi222012; lotgi201174; lotgi226838; lotgi199128; lotgi230301; lotgi205560; lotgi230007; lotgi198201; lotgi187701; lotgi223383; lotgi193895; lotgi225073; lotgi207113                                                                                               Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_783878; XP_781611; XP_785316.2; NP_001116984; NP_001229596.1                                                             Mann 2008b; Mann 2010                                    Membrane                    
Ribosomal protein **                                                              -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi121932; lotgi237709; lotgi2099786; lotgi223917                                                                                                                                                                                                                   Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_794024.2_NP_001229580.1; XP_798304.1                                                                                     Mann 2008                                                Nuclear Region              
SM30/SM32/SM50                                                                    -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi77105                                                                                                                                                                                                                                                            Mann 2012                                                                                                                                          Strongylocentrotus purpuratus; Paracentrotus lividus  NP_999775.1; NP_999803.1; AF519416.1; NP_999766.1; AAB60620.1; AAA30070.1; XP_79721.1; XP796701.1; CAD56481.1; AM569342.1   Mann 2008; Stumpp; Mann 2010; Martin                     Extracellular               
Synthenin                                                                         -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi186095                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_783994.2                                                                                                                 Mann 2010                                                No Usable GO                
Thioester-containing protein                                                      -                                           nd                                                                    nd                  Crassostrea gigas; Lottia gigantea                                                                                          EKC28380.1; lotgi211452; lotgi162872                                                                                                                                                                                                                                  Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_784747.3                                                                                                                 Mann 2010                                                Extracellular               
Thioredoxin peroxidase                                                            -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi123611; lotgi150310; lotgi183148                                                                                                                                                                                                                                 Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_784460.3; XP_786503.2                                                                                                    Mann 2008; Mann 2010                                     Other                       
Transferrin                                                                       -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi234865                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_786179.3                                                                                                                 Mann 2010                                                Extracellular               
Tubulin                                                                           Stylophora pistillata                       KC479168                                                              Drake               Crassostrea gigas; Lottia gigantea                                                                                          EKC35235.1; lotgi197703; lotgi223558                                                                                                                                                                                                                                  Zhang 2012; Mann 2012                                                                                                                              Strongylocentrotus purpuratus                         XP_795696; XP_791790; XP_782388                                                                                             Mann 2010                                                Microtubules                
Ubiquitin                                                                         Stylophora pistillata                       KC479165                                                              Drake               Pinctada fucata; Lottia gigantea                                                                                            AET80727; lotgi126004; lotgi177660                                                                                                                                                                                                                                    Fang; Mann 2012                                                                                                                                    Strongylocentrotus purpuratus                         P23398; XP_789778                                                                                                           Mann 2010                                                Membrane                    
Uncharacterized 1                                                                 Acropora millepora                          JT020644; JR998853                                                    Moya                Lottia gigantea                                                                                                             lotgi89037                                                                                                                                                                                                                                                            Mann 2012                                                                                                                                          -                                                     nd                                                                                                                          nd                                                       Extracellular               
Uncharacterized 2                                                                 -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi203811                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_003729021.1; XP_801877.1                                                                                                 Mann 2010                                                No Usable GO                
Uncharacterized 3                                                                 -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi196407                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_786023.2                                                                                                                 Mann 2010                                                Other                       
Usherin                                                                           Acropora millepora                          JR980984                                                              Moya                Crassostrea gigas                                                                                                           EKC33039.1                                                                                                                                                                                                                                                            Zhang 2012                                                                                                                                         -                                                     nd                                                                                                                          nd                                                       No Usable GO                
Voltage dependent anion channel **                                                -                                           nd                                                                    nd                  Lottia gigantea                                                                                                             lotgi168464                                                                                                                                                                                                                                                           Mann 2012                                                                                                                                          Strongylocentrotus purpuratus                         XP_780266.1                                                                                                                 Mann 2008                                                Mitochondria                
von Willebrand factor D                                                           Acropora millepora                          JT019923.1; JT012539.1; JT006743.1                                    Moya                Crassostrea gigas                                                                                                           EKC19252.1                                                                                                                                                                                                                                                            Zhang 2012                                                                                                                                         -                                                     nd                                                                                                                          nd                                                       Extracellular/membrane