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#  Complete reference information for:
#  "Cross-phyla clustering of non-redundant carbonate organic matrix proteins" dataset
#  PI: Paul Falkowski (Rutgers)
#  Co-PIs: Y. Rosenthal, R. Sherrell, & O. Schofield (Rutgers)
#  Versto the <a href="ht14
#  Go back to the dataset
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abbrev                  full_reference  
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Drake                   Drake, J. L., Mass, T., Haramaty, L., Zelzion, E., Bhattacharya, D. & Falkowski, P. G. 2013. Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata. Proceedings of the National Academy of Sciences 110(10): 3788-3793.  
Evans                   Evans, J. S. 2012. Aragonite-associated biomineralization proteins are disordered and contain interactive motifs. Bioinformatics 28(24): 3182-3185.  
Fang                    Fang, D., Pan, C., Lin, H., Lin, Y., Xu, G., Zhang, G., Wang, H., Xie, L. & Zhang, R. 2012. Ubiquitylation functions in the calcium carbonate biomineralization in the extracellular matrix. PLoS ONE 7(4): e35715.  
Hasegawa & Uchiyama     Hasegawa, Y. & Uchiyama, K. 2005. cDNA clonings of shell matrix proteins from scallop shell. Fish Sci 71(5): 1174-1178.  
Illies                  Illies, M.R., Peeler, M.T., Dechtiaruk, A.M., & Ettensohn, C.A. 2002. Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus. Dev Genes Evol 212(9): 419-31.  
Kong                    Kong, Y., Jing, G., Yan, Z., Li, C., Gong, N., Zhu, F., Li, D., Zhang, Y., Zheng, G., Wang, H., et al. 2009. Cloning and Characterization of Prisilkin-39, a Novel Matrix Protein Serving a Dual Role in the Prismatic Layer Formation from the Oyster Pinctada fucata. J Biol Chem 284(16): 10841-10854.  
Joubert                 Joubert, C., Piquemal, D., Marie, B., Manchon, L., Pierrat, F., Zanella-Cleon, I., Cochennec-Laureau, N., Gueguen, Y. & Montagnani, C. 2010. Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: Focus on biomineralization. BMC Genomics 11(1): 613.  
Li                      Li, S., Xie, L., Ma, Z. & Zhang, R. 2005. cDNA cloning and characterization of a novel calmodulin-like protein from pearl oyster Pinctada fucata. FEBS J 272(19): 4899-4910.  
Mann 2008               Mann, K., Poustka, A. & Mann, M. 2008. The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes. Proteome science 6(1): 22.  
Mann 2008b              Mann, K., Poustka, A. & Mann, M. 2008. In-depth, high-accuracy proteomics of sea urchin tooth organic matrix. Proteome science 6(1): 33.  
Mann 2010               Mann, K., Wilt, F. H. & Poustka, A. J. 2010. Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix. Proteome Science 8: 33.  
Mann 2012               Mann, K., Edsinger-Gonzales, E. & Mann, M. 2012. In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea. Proteome science 10(1): 1-18.  
Marie                   Marie, B., Marie, A., Jackson, D., Dubost, L., Degnan, B., Milet, C. & Marin, F. 2010. Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell. Proteome science 8(1): 54.  
Martin                  Martin, S., Richier, S., Pedrotti, M.-L., Dupont, S., Castejon, C., Gerakis, Y., Kerros, M.-E., Oberhansli, F., Teyssie, J.-L., Jeffree, R., et al. 2011. Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification. The Journal of Experimental Biology 214(8): 1357-1368.  
Moya                    Moya, A., Huisman, L., Ball, E. E., Hayward, D. C., Grasso, L. C., Chua, C. M., Woo, H. N., Gattuso, J. P., Foret, S. & Miller, D. J. 2012. Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Mol Ecol 21(10): 2440-2454.  
Ramos-Silva             Ramos-Silva, P., Kaandorp, J., Huisman, L., Marie, B., Zanella-Cleon, I., Guichard, N., Miller, D. J. & Marin, F. 2013. The skeletal proteome of the coral Acropora millepora: The evolution of calcification by cooption and domain shuffling. Mol Biol Evol.  
Sarashina & Endo 1998   Sarashina, I. & Endo, K. 1998. Primary structure of a soluble matrix protein of scallop shell: implications for calcium carbonate biomineralization. American Mineralogist 83: 1510-1515.  
Sarashina & Endo 2001   Sarashina, I. & Endo, K. 2001. The complete primary structure of molluscan shell protein 1 (MSP-1), an acidic glycoprotein in the shell matrix of the scallop Patinopecten yessoensis. Mar Biotechnol 3(4): 362-369.  
Stumpp                  Stumpp, M., Dupont, S., Thorndyke, M. C. & Melzner, F. 2011. CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 160(3): 320-330.  
Sudo                    Sudo, S., Fujikawa, T., Nagakura, T., Ohkubo, T., Sakaguchi, K., Tanaka, M., Nakashima, K. & Takahashi, T. 1997. Structures of mollusc shell framework proteins. Nature 387(6633): 563-564.  
Suzuki                  Suzuki, M., Murayama, E., Inoue, H., Ozaki, N., Tohse, H., Kogure, T. & Nagasawa, H. 2004. Characterization of Prismalin-14, a novel matrix protein from the prismatic layer of the Japanese pearl oyster (Pinctada fucata). Biochem J 382(1): 205-213.  
Todgham & Hofmann       Todgham, A. E. & Hofmann, G. E. 2009. Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification. J Exp Biol 212(16): 2579-2594.  
Treccani                Treccani, L., Mann, K., Heinemann, F. & Fritz, M. 2006. Perlwapin, an Abalone Nacre Protein with Three Four-Disulfide Core (Whey Acidic Protein) Domains, Inhibits the Growth of Calcium Carbonate Crystals. Biophys J 91(7): 2601-2608.  
Xuan Ri                 Xuan Ri, S., Hideyuki, K. & Koretaro, T. 2007. Characterization of molecular species of collagen in scallop mantle. Food Chem 102(4): 1187-1191.  
Yano                    Yano, M., Nagai, K., Morimoto, K. & Miyamoto, H. 2006. Shematrin: A family of glycine-rich structural proteins in the shell of the pearl oyster Pinctada fucata. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 144(2): 254-262.  
Zhang 2003              Zhang, Y., Xie, L., Meng, Q., Jiang, T., Pu, R., Chen, L. & Zhang, R. 2003. A novel matrix protein participating in the nacre framework formation of pearl oyster, Pinctada fucata. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 135(3): 565-573.  
Zhang 2012              Zhang, G., Fang, X., Guo, X., Li, L., Luo, R., Xu, F., Yang, P., Zhang, L., Wang, X., Qi, H., et al. 2012. The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490(7418): 49-54.