# Rockfish-kelp and rockfish-microhaplotype data # M. Carr, JC Garza, C. Edwards (UCSC) # version: 2018-02-27. files downloaded from Dryad.org on 2018-02-23 to 27 # ========================= file_link file_size publication Dryad_DOI description file_name ------------------------- 192_loci_kelpRF_consensus_Dryad-dnload_2018-02-23.fasta 25.68 KB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d FASTA file with consensus sequences for all 192 targeted amplicons 192_loci_kelpRF_consensus_Dryad-dnload_2018-02-23.fasta Genotypes_144kelpRF_Dryad-dnload_2018-02-23.csv 794.0 KB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d Genotypes and associated read depths for 144 kelp rockfish at 165 microhaplotypes Genotypes_144kelpRF_Dryad-dnload_2018-02-23.csv Panel1_bam_files_Dryad-dnload_2018-02-27.zip 1.464 GB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d BAM files for 144 kelp rockfish with 96 microhaplotypes Panel1_bam_files_Dryad-dnload_2018-02-27.zip Panel2_bam_files_Dryad-dnload_2018-02-27.zip 703.9 MB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d BAM files for 96 kelp rockfish with 96 microhaplotypes Panel2_bam_files_Dryad-dnload_2018-02-27.zip Primers_kelpRF_192_loci_Dryad-dnload_2018-02-23.xlsx 48.54 KB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d Primer sequences for 192 targeted regions. Primers_kelpRF_192_loci_Dryad-dnload_2018-02-23.xlsx R_Notebook_Statistical_BaetscherEtAl_Dryad-dnload_2018-02-27.zip 47.74 MB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d R Notebook describing all statistical analyses in Baetscher et al. R_Notebook_Statistical_BaetscherEtAl_Dryad-dnload_2018-02-27.zip satro144_panel1_flashed_noMNP_noComplex_Dryad_dnload_2018-02-27.vcf 2.972 MB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d Variant call format file for 96(144?) of the 192 microhaplotypes described in Baetscher et al. satro144_panel1_flashed_noMNP_noComplex_Dryad_dnload_2018-02-27.vcf satro96_panel2_run2_flashed_noMNP_noComplex_Dryad_dnload_2018-02-27.vcf 3.999 MB Baetsche et al (2017) Molec. Ecol. Res. 10.5061/dryad.5863d Variant call format file for 96 of the 192 microhaplotypes described in Baetscher et al. satro96_panel2_run2_flashed_noMNP_noComplex_Dryad_dnload_2018-02-27.vcf KelpRockfish_96loci_sortedBaetscherEtAl_Dryad-dnload_2018-02-27.vcf 184 MB Baetscher al (2018?) Molec. Ecology 10.5061/dryad.vq3rg55 Variant call format file generated using Freebayes software from 2 KelpRockfish_96loci_sortedBaetscherEtAl_Dryad-dnload_2018-02-27.vcf KelpRockfish_genotypesBaetscherEtAl_Dryad-dnload_2018-02-23.csv 64.17 MB Baetscher al (2018?) Molec. Ecology 10.5061/dryad.vq3rg55 Genotypes for 96 microhaplotypes KelpRockfish_genotypesBaetscherEtAl_Dryad-dnload_2018-02-23.csv